BioPHP: PHP for Biocomputing |
Last updated: June 3, 2003
All the scripts were written by Serge Gregorio. Most of the Combo scripts use unreleased BioPHP 1.1 code, while most of the Simple scripts use released BioPHP 1.0 code. Combo scripts use a combination of different BioPHP classes and methods to perform a certain (non-trivial, real world) task. Simple scripts are short scripts written simply to demonstrate the capabilities and proper use of BioPHP classes or methods. This section is still under development. At the moment, source code listings are available for only a few scripts. While parameter pages have a consistent look and feel, the results pages have not yet been standardized. Please bear with us. |
Combo scripts | top |
Sequence Records Query-by-Example (QBE) Script (50 % complete)
Six-frame Protein Translation Script
Six-frame Protein Translation Script Version 2
Reverse Protein Translation Script
Find a Pair of Restriction Sites in a Sequence (90% complete)
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Simple scripts | top |
Nucleotide Pattern Matching Script
Charge/Chemgroup String Script [ View source code ]
Protein Translation Script [ View source code ]
Find Mirror/Palindrome in a Sequence
Various Methods of the Seq class
Find Fragments from Restriction Enzyme Digest [ View source code ]
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