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Source Code Listing for trans_res.phpNote: This uses unreleased BioPHP 1.1 code. Attempting to run this with 1.0 may result in some unexplained or unpredictable behavior. // This code was written by Serge Gregorio, Jr. (serge525@hotmail.com) // and is under the General Public License (GPL) 2.0 license. <html> <head> <title>Charge and Chemgrp Example</title> <meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1"> </head> <body bgcolor="#FFFFCC" text="#000000"> <H1>Protein Translation - Result Page</H1> <p><B>TRANSLATION OPTIONS</B> </p> <p><b>Output Format:</b> <?php print ($outformat == 1 ? "Single-letter" : "Three-letter") ?> </p> <b>Reading Frame:</b> <?php print $rdframe ?><BR> <table> <tr> <td> <br> <B>INPUT SEQUENCE:</B><BR> <textarea name="nucseq" rows=15 cols=80 align=right readonly> <?php require_once("seq.inc"); $amseq = strtoupper($amseq); $fmt_nucseq = preg_replace("/[^ATGCU*X]/", "", $nucseq); $seqo = new Seq(); $seqo->sequence = $fmt_nucseq; @$translation = trim($seqo->translate($rdframe, $outformat)); print $fmt_nucseq; ?> </textarea> </td></tr> <tr> <td> <BR> <B>PROTEIN TRANSLATION:</B><BR> <textarea name="translation_string" rows=15 cols=80 readonly> <?php print $translation; ?> </textarea> </td> </tr> </table> <p>Back to <a href='translate_par.html'>Parameter Page</a> </p> </body> </html> [ Listing of Web Scripts ] [ Parameter Page ] [ Home Page ] |