BioPHP: PHP for Biocomputing
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BioPHP: PHP for Biocomputing |
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Source Code Listing for charge_res.phpNote: This uses unreleased BioPHP 1.1 code. Attempting to run this with 1.0 may result in some unexplained or unpredictable behavior.
// This code was written by Serge Gregorio, Jr. (serge525@hotmail.com)
// and is under the General Public License (GPL) 2.0 license.
<html>
<head>
<title>Charge and Chemgrp Example</title>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
</head>
<body bgcolor="#FFFFCC" text="#000000">
<H1>Charge/Chemgroup String - Result Page</H1>
<table>
<tr>
<td>
<br><B>INPUT SEQUENCE:</B><BR>
<textarea name="nucseq" rows=15 cols=80 align=right>
<?php
require_once("seq.inc");
require_once("etc.inc");
$amseq = strtoupper($amseq);
$fmt_amseq = preg_replace("/[^GAVLISTNQFYWCMPDEKRH*X]/", "", $amseq);
$seqo = new Seq();
$seqo->sequence = $fmt_amseq;
@$charge_string = $seqo->charge();
@$chemgrp_string = $seqo->chemgrp();
print $fmt_amseq;
?>
</textarea>
</td>
</tr>
<tr>
<td>
<BR><B>CHARGE STRING:</B><BR>
<textarea name="charge_string" rows=15 cols=80>
<?php
print $charge_string;
?>
</textarea>
</td>
</tr>
<tr>
<td>
<BR><B>CHEMGRP STRING:</B><BR>
<textarea name="chemgrp_string" rows=15 cols=80>
<?php
print $chemgrp_string;
?>
</textarea>
</td>
</tr>
</table>
<p>Back to <a href='charge_par.html'>Parameter Page</a> </p>
</body>
</html>
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