BioPHP: PHP for Biocomputing
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BioPHP: PHP for Biocomputing |
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Source Code Listing for trans_res.phpNote: This uses unreleased BioPHP 1.1 code. Attempting to run this with 1.0 may result in some unexplained or unpredictable behavior.
// This code was written by Serge Gregorio, Jr. (serge525@hotmail.com)
// and is under the General Public License (GPL) 2.0 license.
<html>
<head>
<title>Charge and Chemgrp Example</title>
<meta http-equiv="Content-Type" content="text/html; charset=iso-8859-1">
</head>
<body bgcolor="#FFFFCC" text="#000000">
<H1>Protein Translation - Result Page</H1>
<p><B>TRANSLATION OPTIONS</B> </p>
<p><b>Output Format:</b>
<?php print ($outformat == 1 ? "Single-letter" : "Three-letter") ?>
</p>
<b>Reading Frame:</b> <?php print $rdframe ?><BR>
<table>
<tr>
<td>
<br>
<B>INPUT SEQUENCE:</B><BR>
<textarea name="nucseq" rows=15 cols=80 align=right readonly>
<?php
require_once("seq.inc");
$amseq = strtoupper($amseq);
$fmt_nucseq = preg_replace("/[^ATGCU*X]/", "", $nucseq);
$seqo = new Seq();
$seqo->sequence = $fmt_nucseq;
@$translation = trim($seqo->translate($rdframe, $outformat));
print $fmt_nucseq;
?>
</textarea>
</td></tr>
<tr>
<td>
<BR>
<B>PROTEIN TRANSLATION:</B><BR>
<textarea name="translation_string" rows=15 cols=80 readonly>
<?php
print $translation;
?>
</textarea>
</td>
</tr>
</table>
<p>Back to <a href='translate_par.html'>Parameter Page</a> </p>
</body>
</html>
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