BioPHP: PHP for Biocomputing

Last updated: May 17, 2003 (Saturday)


PHP Links  

Learn PHP

Those interested in learning more about PHP can visit the links provided below:

Official PHP website
PHP Builder - PHP Tips
Webmonkey - PHP Tutorials
Database Journal - PHP Tutorials

Later on, there will be short reviews of the usefulness of these sites to someone who is new to PHP.

Programming Tools

Official PHP website
Official Perl website
Official BioPerl website
Official BioPython website
Official BioRuby website
Official BioJava website

Open Source Development Sites

Open Bioinformatics Foundation
Bioinformatics.org
Sourceforge Open Source Website


Bioinformatics Links  

Learn Bioinformatics

Those interested in learning more about bioinformatics can visit the links provided below:

How Cells Work  
How Cloning Works  
How Viruses Work  
How the Immune System Works  
How the Gene Pool Works  
UCL's Protein Sequence Analysis Guide  

Later on, there will be short reviews of the usefulness of these sites to someone who is new to biology/bioinformatics.

Bio Databases

EMBL - at the European Molecular Biology Laboratory (EMBL)
GenBank - at the National Center for Biotechnology Information (NCBI)
Swiss-Prot - also the EMBL.
PIR - Protein Information Resource at the National Biomedical Research Foundation (NBRF)
PDB - Protein Data Bank at the Research Collaboratory for Structural Bioinformatics (RCSB).
RefSeq

Other Institutes and Organizations

Canada's Michael Smith Genome Sciences Center   
The Human Genome Project  
Fred Hutchinson Cancer Research Center
The Wellcome Trust Sanger Institute
Compugen Corporation  

Bioinformatics Software

Gene/Feature Finders

   Genewise   
   Codehop   

Sequence Alignment

   TCoffee
   Clustalw
   BLAST  

Visualization Software, Applets, etc.

   Deepview   
   Java based Molecular Biologist's Workbench (JaMBW)
   Matrix Plot  

Biological Pathways

   WIT (What Is There?)  

Software Suites

   EMBOSS

Links to Links

   Georgetown University's Bioinformatics Links

Other Links  

Project Members' Links

   Serge Gregorio's Homepage
   Serge's iFAQ

 

 

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Copyright © 2003 by Sergio Gregorio, Jr.
All rights reserved.